Insights
Cheapest hotels
Where to stay

Hotels in Mission Bay, San Diego

Search and compare Mission Bay, San Diego hotels from hundreds of travel sites on HotelsCombined and save.

...and more

Learn why travellers love HotelsCombined

Compare hotel ratings collected from thousands of user reviews.

One search gives you accurate pricing on affordable hotels.

Customie your results by hotel chain, amenities, price and more.

Search for hotels as many times as you want – for free.

Travel insights for hotels in Mission Bay

Use these up-to-date, data-driven insights about booking a hotel in Mission Bay including ideal times to book, pricing trends, and more.

What is the cheapest month to book a hotel in Mission Bay?

The cheapest month to book a hotel in Mission Bay is February ($319). Conversely, the most expensive month to stay in Mission Bay is August ($965).

What is the cheapest day to stay in a hotel in Mission Bay?

The cheapest day to stay in Mission Bay is Tuesday ($351). On the other hand, travelers can expect to pay the most on Thursday, when the average nightly price is $538.

How much is a hotel in Mission Bay tonight?

Users have found prices for hotels in Mission Bay tonight starting as low as $234, rising to an average cost of $305, based on searches in the last 72 hours. Prices start from $303 for a 4-star hotel in Mission Bay for tonight.

How much is a Mission Bay hotel room this weekend?

In the past 72 hours, we’ve seen prices for hotels in Mission Bay this weekend for as little as $282/night. If you’re specifically looking for a 3-star hotel this weekend, our users have found prices as low as $346/night. For a 4-star hotel in Mission Bay, the cheapest rate recently found was $410/night for this weekend.
Find deals

Cheapest hotels in Mission Bay, San Diego

Discover affordable stays in Mission Bay that provide a quality experience without breaking the bank. Hotels in Mission Bay can be found for as low as $228 per night. There is currently one property in Mission Bay that can be booked for this price. The Dana on Mission Bay is one of the hotels that can be booked for the lowest price in Mission Bay. Price data was last updated on 15 October 2025
Out of the hotels in Mission Bay we've come across, these properties are priced the lowest. Prices will typically fluctuate depending on the dates selected, star rating of hotel, and hotel location.
The Dana on Mission Bay
The Dana on Mission Bay

The Dana on Mission Bay

1710 West Mission Bay Drive, San Diego, CA, United States
9.4 km from city centre
$228
Avg. per night
View Deal
Bahia Resort Hotel
Bahia Resort Hotel

Bahia Resort Hotel

998 West Mission Bay Drive, San Diego, CA, United States
10.4 km from city centre
Free Wi-Fi
Parking
$318
Avg. per night
View Deal
The Wayfarer San Diego
The Wayfarer San Diego

The Wayfarer San Diego

707 Pacific Beach Drive, San Diego, CA, United States
12.4 km from city centre
Free Wi-Fi
$348
Avg. per night
View Deal
Hyatt Regency Mission Bay Spa And Marina
Hyatt Regency Mission Bay Spa And Marina

Hyatt Regency Mission Bay Spa And Marina

1441 Quivira Road, San Diego, CA, United States
9.6 km from city centre
Free Wi-Fi
$350
Avg. per night
View Deal
San Diego Mission Bay Resort
San Diego Mission Bay Resort

San Diego Mission Bay Resort

1775 East Mission Bay Drive, San Diego, CA, United States
8.6 km from city centre
Free Wi-Fi
$358
Avg. per night
View Deal
Catamaran Resort Hotel and Spa
Catamaran Resort Hotel and Spa

Catamaran Resort Hotel and Spa

3999 Mission Boulevard, San Diego, CA, United States
12.2 km from city centre
Free Wi-Fi
$363
Avg. per night
View Deal
Paradise Point Resort & Spa
Paradise Point Resort & Spa

Paradise Point Resort & Spa

1404 Vacation Road, San Diego, CA, United States
10.1 km from city centre
$414
Avg. per night
View Deal

Hotel prices in Mission Bay

Get a sense of the average price and most popular properties to stay in Mission Bay to help you budget for your trip accordingly. Hotels that are booked the most in each class receive the “Most popular” badge. Hotels with the “Best value” badge are the most popular hotels in Mission Bay at attractive prices. Price data was last updated on 15 October 2025.
Hotels located in the Mission Bay area sorted by price and hotel class. You'll also find the most popular and best value properties within each hotel class.
4 stars +
Paradise Point Resort & Spa
Paradise Point Resort & Spa

Paradise Point Resort & Spa

1404 Vacation Road, San Diego, CA, United States
$414
View Deal
Catamaran Resort Hotel and Spa
Catamaran Resort Hotel and Spa

Catamaran Resort Hotel and Spa

3999 Mission Boulevard, San Diego, CA, United States
$363
View Deal
Hyatt Regency Mission Bay Spa And Marina
Hyatt Regency Mission Bay Spa And Marina

Hyatt Regency Mission Bay Spa And Marina

1441 Quivira Road, San Diego, CA, United States
$350
View Deal
The Wayfarer San Diego
The Wayfarer San Diego

The Wayfarer San Diego

707 Pacific Beach Drive, San Diego, CA, United States
$348
View Deal
3 stars
Bahia Resort Hotel
Bahia Resort Hotel

Bahia Resort Hotel

998 West Mission Bay Drive, San Diego, CA, United States
$318
View Deal
The Dana on Mission Bay
The Dana on Mission Bay

The Dana on Mission Bay

1710 West Mission Bay Drive, San Diego, CA, United States
$228
View Deal

Where to stay in Mission Bay

Explore different neighbourhoods and areas within Mission Bay to find the perfect location for your stay. Map data was last updated on 15 October 2025.
Navigate to the areas in Mission Bay you plan to visit to find hotels that are close by. Users can click on a hotel's name to find more information about it, such as price, reviews, and amenities, and also find different deals for the property.

Facts about staying in Mission Bay, San Diego

Find useful tips and insights about staying in Mission Bay to help you make the most of your experience. FAQs were last updated on 15 October 2025.

  • What are the best hotels in Mission Bay?

    Paradise Point Resort & Spa, rated with a score of 8.1 from 1,879 reviewers, is one of the most popular hotels in Mission Bay. Other top stays include The Dana on Mission Bay, with an average rating of 8.3 from 1,738 reviewers, and The Wayfarer San Diego, with a score of 8.7 from 1,735 reviewers.

  • What is a good hotel near Pacific Beach Park?

    Catamaran Resort Hotel and Spa is a good hotel close to Pacific Beach Park - it has scored 8.2 over 670 reviews from HotelsCombined users.

  • What is a good hotel in Mission Bay near B Street Cruise Ship Terminal?

    Pendry San Diego is a hotel near B Street Cruise Ship Terminal that is popular with HotelsCombined users, scoring 8.6 from 546 reviews.

  • Is there a good hotel near Gaslamp Quarter?

    If you’re looking for good hotels near Gaslamp Quarter, consider Pendry San Diego (rated 8.6 over 546 reviews).

  • How much is a cheap hotel in Mission Bay?

    $212/night is the cheapest price found for a hotel in Mission Bay by HotelsCombined users over the last 72 hours.

  • What are the most popular landmarks to visit in Mission Bay?

    There’s so much to see and do in Mission Bay, but we’ve found that the most popular landmarks are Pacific Beach Park, B Street Cruise Ship Terminal, and Gaslamp Quarter. You’ll want to stay in San Diego to visit Pacific Beach Park, San Diego to visit B Street Cruise Ship Terminal, and San Diego to visit Gaslamp Quarter.

See more FAQs

Find better results for your stay in Mission Bay

Consider these popular 3-star hotels in Mission Bay

Stay at one of these Mission Bay 3-star hotels that users have found on HotelsCombined.
Bahia Resort Hotel
The Dana on Mission Bay

Search cheap hotels with HotelsCombined. Use the hotel finder to search for the cheapest hotel deal for all major destinations around the world. HotelsCombined searches hundreds of hotel booking sites to help you find hotels and book hotels that suit you best. Since HotelsCombined searches many hotel sites at once, you can find discount hotels quickly. Discover hotel discounts now and make your hotel reservation today.